Full TreeΒΆ
BIDS preprocessing
- brain_pipe
- brain_pipe.cli
- brain_pipe.dataloaders
- brain_pipe.parser
- brain_pipe.parser.base
- brain_pipe.parser.file
- brain_pipe.parser.file.FileLoadMixin
- brain_pipe.parser.file.FileParser
FileParserFileParser.__init__()FileParser.apply_config()FileParser.get_additional_kwargs()FileParser.get_runner_from_parsed_config()FileParser.link_loader_to_pipeline()FileParser.load_file()FileParser.parse_all()FileParser.parse_text_to_dict()FileParser.recursive_parse()FileParser.set_additional_kwargs()
- brain_pipe.parser.file.TemplateFileParser
TemplateFileParserTemplateFileParser.__init__()TemplateFileParser.apply_config()TemplateFileParser.get_additional_kwargs()TemplateFileParser.get_runner_from_parsed_config()TemplateFileParser.link_loader_to_pipeline()TemplateFileParser.load_file()TemplateFileParser.parse_all()TemplateFileParser.parse_text_to_dict()TemplateFileParser.recursive_parse()TemplateFileParser.set_additional_kwargs()
- brain_pipe.parser.simple_dict
- brain_pipe.parser.template_text
- brain_pipe.parser.template_text.TemplateTextParser
TemplateTextParserTemplateTextParser.__init__()TemplateTextParser.apply_config()TemplateTextParser.get_additional_kwargs()TemplateTextParser.get_runner_from_parsed_config()TemplateTextParser.link_loader_to_pipeline()TemplateTextParser.parse_all()TemplateTextParser.parse_text_to_dict()TemplateTextParser.recursive_parse()TemplateTextParser.set_additional_kwargs()
- brain_pipe.parser.template_text.TemplateTextParser
- brain_pipe.parser.text
- brain_pipe.parser.yaml
- brain_pipe.parser.yaml.YAMLFileParser
YAMLFileParserYAMLFileParser.__init__()YAMLFileParser.apply_config()YAMLFileParser.get_additional_kwargs()YAMLFileParser.get_runner_from_parsed_config()YAMLFileParser.link_loader_to_pipeline()YAMLFileParser.load_file()YAMLFileParser.parse_all()YAMLFileParser.parse_text_to_dict()YAMLFileParser.recursive_parse()YAMLFileParser.set_additional_kwargs()
- brain_pipe.parser.yaml.YAMLMixin
- brain_pipe.parser.yaml.YAMLTemplateFileParser
YAMLTemplateFileParserYAMLTemplateFileParser.__init__()YAMLTemplateFileParser.apply_config()YAMLTemplateFileParser.get_additional_kwargs()YAMLTemplateFileParser.get_runner_from_parsed_config()YAMLTemplateFileParser.link_loader_to_pipeline()YAMLTemplateFileParser.load_file()YAMLTemplateFileParser.parse_all()YAMLTemplateFileParser.parse_text_to_dict()YAMLTemplateFileParser.recursive_parse()YAMLTemplateFileParser.set_additional_kwargs()
- brain_pipe.parser.yaml.YAMLTextParser
YAMLTextParserYAMLTextParser.__init__()YAMLTextParser.apply_config()YAMLTextParser.get_additional_kwargs()YAMLTextParser.get_runner_from_parsed_config()YAMLTextParser.link_loader_to_pipeline()YAMLTextParser.parse_all()YAMLTextParser.parse_text_to_dict()YAMLTextParser.recursive_parse()YAMLTextParser.set_additional_kwargs()
- brain_pipe.parser.yaml.YAMLFileParser
- brain_pipe.pipeline
- brain_pipe.pipeline.base
- brain_pipe.pipeline.cache
- brain_pipe.pipeline.cache.base
- brain_pipe.pipeline.cache.base.PipelineCache
PipelineCachePipelineCache.__init__()PipelineCache.find_existing_cache_from_data_dict()PipelineCache.find_existing_cache_from_previous_filename()PipelineCache.get_cache_dict()PipelineCache.get_existing_cache_paths()PipelineCache.get_filename()PipelineCache.get_foldername()PipelineCache.get_path()PipelineCache.load()PipelineCache.load_from_data_dict()PipelineCache.predict_filenames_from_data_dict()PipelineCache.predict_filenames_from_previous_filename()PipelineCache.predict_paths_from_data_dict()PipelineCache.predict_paths_from_previous_filename()PipelineCache.save()
- brain_pipe.pipeline.cache.base.PipelineCache
- brain_pipe.pipeline.cache.default
- brain_pipe.pipeline.cache.default.DefaultPipelineCache
DefaultPipelineCacheDefaultPipelineCache.__init__()DefaultPipelineCache.find_existing_cache_from_data_dict()DefaultPipelineCache.find_existing_cache_from_previous_filename()DefaultPipelineCache.get_cache_dict()DefaultPipelineCache.get_existing_cache_paths()DefaultPipelineCache.get_filename()DefaultPipelineCache.get_foldername()DefaultPipelineCache.get_path()DefaultPipelineCache.load()DefaultPipelineCache.load_from_data_dict()DefaultPipelineCache.predict_filenames_from_data_dict()DefaultPipelineCache.predict_filenames_from_previous_filename()DefaultPipelineCache.predict_paths_from_data_dict()DefaultPipelineCache.predict_paths_from_previous_filename()DefaultPipelineCache.save()
- brain_pipe.pipeline.cache.default.DefaultPipelineCache
- brain_pipe.pipeline.cache.pipeline
- brain_pipe.pipeline.cache.base
- brain_pipe.pipeline.default
- brain_pipe.pipeline.wrapper
- brain_pipe.preprocessing
- brain_pipe.preprocessing.brain
- brain_pipe.preprocessing.brain.artifact
- brain_pipe.preprocessing.brain.artifact.ArtifactRemovalMWF
ArtifactRemovalMWFArtifactRemovalMWF.__init__()ArtifactRemovalMWF.apply_mwf()ArtifactRemovalMWF.check_symmetric()ArtifactRemovalMWF.compute_mwf()ArtifactRemovalMWF.fix_symmetric()ArtifactRemovalMWF.get_artifact_segments()ArtifactRemovalMWF.parse_dict_keys()ArtifactRemovalMWF.sort_evd()ArtifactRemovalMWF.stack_delayed()
- brain_pipe.preprocessing.brain.artifact.InterpolateArtifacts
- brain_pipe.preprocessing.brain.artifact.ArtifactRemovalMWF
- brain_pipe.preprocessing.brain.eeg
- brain_pipe.preprocessing.brain.epochs
- brain_pipe.preprocessing.brain.link
- brain_pipe.preprocessing.brain.load
- brain_pipe.preprocessing.brain.rereference
- brain_pipe.preprocessing.brain.trigger
- brain_pipe.preprocessing.brain.artifact
- brain_pipe.preprocessing.filter
- brain_pipe.preprocessing.resample
- brain_pipe.preprocessing.stimulus
- brain_pipe.preprocessing.stimulus.audio
- brain_pipe.preprocessing.stimulus.load
- brain_pipe.preprocessing.transpose
- brain_pipe.preprocessing.brain
- brain_pipe.runner
- brain_pipe.save
- brain_pipe.save.base
- brain_pipe.save.default
- brain_pipe.save.default.default_metadata_key_fn
- brain_pipe.save.default.AttachSave
- brain_pipe.save.default.CheckFunctor
- brain_pipe.save.default.DefaultFilenameFn
- brain_pipe.save.default.DefaultSave
- brain_pipe.save.default.DefaultSaveMetadata
DefaultSaveMetadataDefaultSaveMetadata.__init__()DefaultSaveMetadata.add()DefaultSaveMetadata.attach_saver()DefaultSaveMetadata.clear()DefaultSaveMetadata.convert_old_format()DefaultSaveMetadata.get()DefaultSaveMetadata.get_metadata_for_savepath()DefaultSaveMetadata.get_path()DefaultSaveMetadata.get_relpath()DefaultSaveMetadata.is_old_format()DefaultSaveMetadata.lockDefaultSaveMetadata.write()
- brain_pipe.save.default.IsDoneCheck
- brain_pipe.save.default.IsReloadableCheck
- brain_pipe.save.default.OldMetadataCompliant
- brain_pipe.save.default.SaveMetadata
- brain_pipe.split
- brain_pipe.utils
- brain_pipe.utils.ObjectsWithConfig
- brain_pipe.utils.find
- brain_pipe.utils.list
- brain_pipe.utils.log
- brain_pipe.utils.parallellization
- brain_pipe.utils.path
- brain_pipe.utils.serialization